SMTL ID : 5va4.1

TRIM-Cyclophilin A B-box 2 and coiled-coil chimera

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-trimer

Ligands

9 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.20, Q.22, D.23, H.37, H.40 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:D.23, A:H.37, A:H.40 ZN.2: 6 residues within 4Å: Chain A: C.9, H.11, H.12, C.28, L.30, C.31 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:H.12, A:C.28, A:C.31 ZN.3: 3 residues within 4Å: Chain A: E.71, C.74, C.99 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.71, A:C.74, A:C.99 ZN.4: 5 residues within 4Å: Chain B: C.20, Q.22, D.23, H.37, H.40 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.20, B:D.23, B:H.37, B:H.40 ZN.5: 6 residues within 4Å: Chain B: C.9, H.11, H.12, C.28, L.30, C.31 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.9, B:H.12, B:C.28, B:C.31 ZN.6: 3 residues within 4Å: Chain B: E.71, C.74, C.99 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.71, B:C.74, B:C.99 ZN.7: 5 residues within 4Å: Chain C: C.20, Q.22, D.23, H.37, H.40 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.20, C:D.23, C:H.37, C:H.40 ZN.8: 6 residues within 4Å: Chain C: C.9, H.11, H.12, C.28, L.30, C.31 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.9, C:H.12, C:C.28, C:C.31 ZN.9: 3 residues within 4Å: Chain C: E.71, C.74, C.99 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.71, C:C.74, C:C.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wagner, J.M. et al., General Model for Retroviral Capsid Pattern Recognition by TRIM5 Proteins. J. Virol. (2018)

Release Date

2017-11-22

Peptides

TRIM5/cyclophilin A V4 fusion protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

TRIM5/cyclophilin A V4 fusion protein