SMTL ID : 5vac.1

Crystal Structure of ATXR5 SET domain in complex with K36me3 histone H3 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 17 residues within 4Å: Chain A: L.42, R.104, E.105, G.106, F.107, D.140, S.141, R.167, F.168, S.170, G.171, Y.213, Y.216, Y.223, F.228, V.229 Chain B: K.10 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:F.107, A:F.107, A:R.167, A:G.171, A:Y.216, A:Y.223, A:Y.223, A:V.229, A:V.229 pi-Stacking: A:F.228, A:F.228

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 2 residues within 4Å: Chain A: M.32, F.46 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:F.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bergamin, E. et al., Molecular basis for the methylation specificity of ATXR5 for histone H3. Nucleic Acids Res. (2017)

Release Date

2017-04-19

Peptides

Probable Histone-lysine N-methyltransferase ATXR5: A
Histone H3.2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Probable Histone-lysine N-methyltransferase ATXR5

Histone H3.2

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