SMTL ID : 5vag.1

Crystal structure of H7-specific antibody m826 in complex with the HA1 domain of hemagglutinin from H7N9 influenza virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: G.124, A.125, W.142, L.144, L.185 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.125 EDO.2: 4 residues within 4Å: Chain A: D.67, Q.68, F.69, L.70 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.68, A:L.70, A:E.71 EDO.3: 5 residues within 4Å: Chain A: Q.201 Chain B: Y.50, S.53, S.54, L.55 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.50, B:S.53, B:L.55 EDO.4: 7 residues within 4Å: Chain B: Q.38, K.46, P.60, R.62, F.63, E.82, D.83 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.38, B:K.46, B:K.46, B:R.62, B:D.83, B:D.83 Water bridges: B:K.40 EDO.5: 5 residues within 4Å: Chain B: P.9, L.12, R.19, V.20, T.21 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.21 Water bridges: B:S.8 EDO.6: 6 residues within 4Å: Chain B: Q.39, K.40, P.41, G.42, K.43 Chain C: Q.39 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B Water bridges: C:Q.39 Hydrogen bonds: B:Q.39, B:G.42, B:K.43 EDO.7: 4 residues within 4Å: Chain B: V.151, Q.156, L.182, H.190 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.156 EDO.8: 7 residues within 4Å: Chain B: Q.161, T.179 Chain C: L.149, V.177, S.185, L.186, S.187 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:S.187 Water bridges: C:S.187, B:S.177, B:T.179, B:T.179 EDO.9: 8 residues within 4Å: Chain C: L.197, G.198, T.199, Q.200, T.201, K.218, E.220, P.221 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:L.197, C:T.201, C:T.201 EDO.10: 8 residues within 4Å: Chain C: Y.153, E.156, P.157, V.158, F.174, P.175, A.176, L.186 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.156, C:V.158, C:V.158, C:A.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, F. et al., A Potent Germline-like Human Monoclonal Antibody Targets a pH-Sensitive Epitope on H7N9 Influenza Hemagglutinin. Cell Host Microbe (2017)

Release Date

2017-12-20

Peptides

Hemagglutinin: A
Light chain of antibody m826: B
Heavy chain of antibody m826: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Hemagglutinin

Light chain of antibody m826

Heavy chain of antibody m826