SMTL ID : 5vah.1 (1 other biounit)

Crystal structure of ATXR5 SET domain in complex with histone H3 di-methylated on R26

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 17 residues within 4Å: Chain A: L.42, R.104, E.105, G.106, F.107, D.140, S.141, R.167, F.168, I.169, S.170, G.171, Y.216, Y.223, F.228, V.229 Chain B: K.7 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:F.107, A:F.107, A:G.171, A:Y.223, A:V.229, A:V.229, A:V.229 Water bridges: A:D.140, A:D.140 Salt bridges: A:R.167 pi-Stacking: A:F.228, A:F.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bergamin, E. et al., Molecular basis for the methylation specificity of ATXR5 for histone H3. Nucleic Acids Res. (2017)

Release Date

2017-04-05

Peptides

Probable Histone-lysine N-methyltransferase ATXR5: A
Histone H3.2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Probable Histone-lysine N-methyltransferase ATXR5

Histone H3.2

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