SMTL ID : 5vao.4 (3 other biounits)

Crystal structure of eVP30 C-terminus and eNP peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: K.45, L.48, Q.74, H.77, S.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.74, A:H.77, A:S.78

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: E.71, Q.74 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.71, H2O.1, H2O.1

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: W.89, L.97 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: T.23, I.24 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: E.67 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: L.61 Ligand excluded by PLIP

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 5 residues within 4Å: Chain A: R.41, F.43, S.44, H.77, E.114 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.77, A:E.114 Water bridges: A:K.45 PEG.8: 7 residues within 4Å: Chain A: H.55, S.96, M.99, F.100 Chain B: A.7, P.8, Y.10 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:F.100, B:Y.10 Water bridges: A:D.93, A:S.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, W. et al., Ebola virus VP30 and nucleoprotein interactions modulate viral RNA synthesis. Nat Commun (2017)

Release Date

2017-06-21

Peptides

Minor nucleoprotein VP30: A
NP: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
G

Minor nucleoprotein VP30

NP

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