SMTL ID : 5var.1

Crystal structure of KDM4A tandem TUDOR domain in complex with a tri-methyl lysine competitive inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x 92Y: (1R,2S,3R,4S)-3-[(dimethylamino)methyl]-1-phenylbicyclo[2.2.1]heptan-2-ol(Non-covalent)

92Y.1: 6 residues within 4Å: Chain A: F.40, D.42, S.44, F.45, W.75, Y.81 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.40, A:F.40, A:F.40, A:D.42, A:W.75, A:Y.81, A:Y.81 Hydrogen bonds: A:D.42, A:S.44 Salt bridges: A:D.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Upadhyay, A.K. et al., Targeting lysine specific demethylase 4A (KDM4A) tandem TUDOR domain - A fragment based approach. Bioorg. Med. Chem. Lett. (2018)

Release Date

2018-03-28

Peptides

Lysine-specific demethylase 4A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific demethylase 4A