SMTL ID : 5vbb.1

Human RNA Pseudouridylate Synthase Domain Containing 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: D.67, F.68, S.69, H.174, R.177, T.192 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.69, A:S.69 Water bridges: A:F.68, A:F.68, A:R.177, A:T.192 Salt bridges: A:R.177 SO4.2: 5 residues within 4Å: Chain A: R.93, P.143, T.170, G.171, R.172 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.171 Salt bridges: A:R.93, A:R.172 SO4.3: 5 residues within 4Å: Chain A: R.120, M.130, K.142, R.172, T.173 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.173, A:T.173 Water bridges: A:N.140, A:R.172 Salt bridges: A:R.120, A:K.142, A:R.172

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: D.67, H.174, Q.175, L.176, R.177, L.208 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: H.64, Q.65, K.97 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: K.97, Y.99, P.168, T.170, G.171, R.172, T.173, Q.175, L.176 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.97, A:G.171, A:Q.175 Water bridges: A:H.174, A:H.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

ZENG, H. et al., Human RNA Pseudouridylate Synthase Domain Containing 1. to be published

Release Date

2017-04-19

Peptides

RNA pseudouridylate synthase domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA pseudouridylate synthase domain-containing protein 1