SMTL ID : 5vbl.1

Structure of apelin receptor in complex with agonist peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.253, C.256, C.286, C.289 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.253, B:C.256, B:C.286, B:C.289

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 11 residues within 4Å: Chain B: F.128, Y.132, L.178, P.181, V.182, M.201, L.219, G.220, S.222, S.223, K.327 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.178, B:L.219 Hydrogen bonds: B:S.223, B:K.327 Water bridges: B:E.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, Y. et al., Structural Basis for Apelin Control of the Human Apelin Receptor. Structure (2017)

Release Date

2017-05-31

Peptides

agonist peptide: A
Apelin receptor,Rubredoxin,Apelin receptor Chimera: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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agonist peptide

Apelin receptor,Rubredoxin,Apelin receptor Chimera

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