SMTL ID : 5vc7.1

VCP like ATPase from T. acidophilum (VAT) - conformation 1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

12 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: D.10, I.11, G.12, L.14, P.52, G.53, T.54, G.55, K.56, T.57, L.58, I.185, H.189, G.218, A.219, A.222 Chain F: R.164, P.165 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.12, A:G.12, A:G.53, A:T.54, A:G.55, A:K.56, A:T.57, A:L.58 ATP.2: 19 residues within 4Å: Chain A: D.287, I.288, G.289, L.291, P.329, G.330, V.331, G.332, K.333, T.334, L.335, D.386, E.387, N.431, I.463, H.467, G.491, A.492, E.495 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.289, A:G.289, A:G.330, A:V.331, A:G.332, A:K.333, A:T.334, A:E.387, A:N.431 ATP.3: 18 residues within 4Å: Chain A: R.164, P.165 Chain B: D.10, I.11, G.12, L.14, P.52, G.53, T.54, G.55, K.56, T.57, L.58, I.185, H.189, G.218, A.219, A.222 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.12, B:G.12, B:G.53, B:T.54, B:G.55, B:K.56, B:T.57, B:L.58 ATP.4: 19 residues within 4Å: Chain B: D.287, I.288, G.289, L.291, P.329, G.330, V.331, G.332, K.333, T.334, L.335, D.386, E.387, N.431, I.463, H.467, G.491, A.492, E.495 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.289, B:G.289, B:G.330, B:V.331, B:G.332, B:K.333, B:T.334, B:E.387, B:N.431 ATP.5: 18 residues within 4Å: Chain B: R.164, P.165 Chain C: D.10, I.11, G.12, L.14, P.52, G.53, T.54, G.55, K.56, T.57, L.58, I.185, H.189, G.218, A.219, A.222 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:G.12, C:G.12, C:G.53, C:T.54, C:G.55, C:K.56, C:T.57, C:L.58 ATP.6: 19 residues within 4Å: Chain C: D.287, I.288, G.289, L.291, P.329, G.330, V.331, G.332, K.333, T.334, L.335, D.386, E.387, N.431, I.463, H.467, G.491, A.492, E.495 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:G.289, C:G.289, C:G.330, C:V.331, C:G.332, C:K.333, C:T.334, C:E.387, C:N.431 ATP.7: 18 residues within 4Å: Chain C: R.164, P.165 Chain D: D.10, I.11, G.12, L.14, P.52, G.53, T.54, G.55, K.56, T.57, L.58, I.185, H.189, G.218, A.219, A.222 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:G.12, D:G.12, D:G.53, D:T.54, D:G.55, D:K.56, D:T.57, D:L.58 ATP.8: 19 residues within 4Å: Chain D: D.287, I.288, G.289, L.291, P.329, G.330, V.331, G.332, K.333, T.334, L.335, D.386, E.387, N.431, I.463, H.467, G.491, A.492, E.495 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:G.289, D:G.289, D:G.330, D:V.331, D:G.332, D:K.333, D:T.334, D:E.387, D:N.431 ATP.9: 18 residues within 4Å: Chain D: R.164, P.165 Chain E: D.10, I.11, G.12, L.14, P.52, G.53, T.54, G.55, K.56, T.57, L.58, I.185, H.189, G.218, A.219, A.222 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:G.12, E:G.12, E:G.53, E:T.54, E:G.55, E:K.56, E:T.57, E:L.58 ATP.10: 19 residues within 4Å: Chain E: D.287, I.288, G.289, L.291, P.329, G.330, V.331, G.332, K.333, T.334, L.335, D.386, E.387, N.431, I.463, H.467, G.491, A.492, E.495 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:G.289, E:G.289, E:G.330, E:V.331, E:G.332, E:K.333, E:T.334, E:E.387, E:N.431 ATP.11: 18 residues within 4Å: Chain E: R.164, P.165 Chain F: D.10, I.11, G.12, L.14, P.52, G.53, T.54, G.55, K.56, T.57, L.58, I.185, H.189, G.218, A.219, A.222 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:G.12, F:G.12, F:G.53, F:T.54, F:G.55, F:K.56, F:T.57, F:L.58 ATP.12: 19 residues within 4Å: Chain F: D.287, I.288, G.289, L.291, P.329, G.330, V.331, G.332, K.333, T.334, L.335, D.386, E.387, N.431, I.463, H.467, G.491, A.492, E.495 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:G.289, F:G.289, F:G.330, F:V.331, F:G.332, F:K.333, F:T.334, F:E.387, F:N.431

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ripstein, Z.A. et al., Structure of a AAA+ unfoldase in the process of unfolding substrate. Elife (2017)

Release Date

2017-04-26

Peptides

VCP-like ATPase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
E

E
F

F
G

VCP-like ATPase

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