SMTL ID : 5vc9.2 (1 other biounit)

Zinc finger of human CXXC4 in complex with CpG DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 2 residues within 4Å: Chain A: A.5, C.6 No protein-ligand interaction detected (PLIP) UNX.2: 5 residues within 4Å: Chain A: T.9, G.10, G.11 Chain B: C.2 Ligands: UNX.3 No protein-ligand interaction detected (PLIP) UNX.3: 3 residues within 4Å: Chain A: G.10, G.11 Ligands: UNX.2 No protein-ligand interaction detected (PLIP) UNX.4: 2 residues within 4Å: Chain B: T.8 Chain C: H.33 No protein-ligand interaction detected (PLIP) UNX.7: 3 residues within 4Å: Chain C: N.19, G.21, R.29 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 6 residues within 4Å: Chain C: C.8, G.9, C.11, C.14, C.41, E.42 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.8, C:C.11, C:C.14, C:C.41 ZN.6: 6 residues within 4Å: Chain C: C.20, G.21, C.23, C.26, C.36, K.37 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.20, C:C.23, C:C.26, C:C.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., DNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants. Structure (2018)

Release Date

2017-06-28

Peptides

CXXC-type zinc finger protein 4: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
F

CXXC-type zinc finger protein 4

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