SMTL ID : 5vcu.2 (1 other biounit)

Crystal structure of ras-related c3 botulinum toxin substrate 1 isoform x2 from Naegleria fowleri in complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: D.19, G.20, A.21, V.22, G.23, K.24, T.25, A.26, F.36, V.41, K.124, D.126, L.127, S.166, A.167, K.168 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.19, A:A.21, A:V.22, A:G.23, A:K.24, A:T.25, A:A.26, A:K.124, A:K.124, A:A.167, A:K.168 Water bridges: A:K.24, A:K.24, A:T.25, A:T.25, A:L.27, A:E.38 Salt bridges: A:K.24, A:D.126 pi-Stacking: A:F.36, A:F.36

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.25, D.65 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.25, H2O.2, H2O.2, H2O.3, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayclin, S.J. et al., Crystal structure of ras-related c3 botulinum toxin substrate 1 isoform x2 from Naegleria fowleri in complex with GDP. to be published

Release Date

2017-05-03

Peptides

Ras-related c3 botulinum toxin substrate 1 isoform x2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ras-related c3 botulinum toxin substrate 1 isoform x2

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