SMTL ID : 5vdb.1

Crystal structure of a GNAT superfamily acetyltransferase PA4794 in complex with bisubstrate analog 3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.51, R.52, G.53 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.53 Water bridges: A:R.52, A:S.54, A:Q.109, A:Y.110 SO4.2: 2 residues within 4Å: Chain A: R.143, H.144 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.144 Salt bridges: A:H.144 SO4.3: 2 residues within 4Å: Chain A: Q.136, R.138 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.136 Salt bridges: A:R.138 SO4.4: 2 residues within 4Å: Chain A: R.52, W.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.72 Salt bridges: A:R.52 SO4.5: 3 residues within 4Å: Chain A: H.7, V.101, N.104 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.104 Water bridges: A:H.7 Salt bridges: A:H.7 SO4.6: 3 residues within 4Å: Chain A: A.141, R.143, Q.155 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.155 Salt bridges: A:R.143

1 x 93M: (3R,5S,9R,26S)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-10,14,20-trioxo-26-({[(phenylacetyl)amino]acetyl}amino)-2,4,6-trioxa-18-thia-11,15,21-triaza-3,5-diphosphaheptacosan-27-oic acid 3,5-dioxide (non-preferred name)(Non-covalent)

93M.7: 29 residues within 4Å: Chain A: E.27, Y.30, C.31, P.33, K.34, R.51, Y.70, Q.71, G.81, N.82, M.83, M.84, V.85, R.90, G.91, L.92, G.93, V.94, A.95, R.96, S.118, N.123, A.125, L.128, L.129, Y.130, Q.132, R.143, L.153 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:Y.70, A:Q.71, A:L.153 Hydrogen bonds: A:Y.70, A:M.83, A:M.83, A:V.85, A:G.91, A:G.91, A:G.93, A:V.94, A:A.95, A:R.96, A:S.118, A:N.123 Water bridges: A:R.51, A:R.51, A:R.51, A:L.92, A:L.92, A:Q.132 Salt bridges: A:R.96, A:R.143 pi-Stacking: A:Y.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reidl, C. et al., Generating enzyme and radical-mediated bisubstrates as tools for investigating Gcn5-related N-acetyltransferases. FEBS Lett. (2017)

Release Date

2017-07-26

Peptides

acetyltransferase PA4794: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

acetyltransferase PA4794