SMTL ID : 5vdn.1

1.55 Angstrom Resolution Crystal Structure of Glutathione Reductase from Yersinia pestis in Complex with FAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

2 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: F.445, D.446, T.448, V.460 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.446, A:T.448, A:V.460, H2O.18, H2O.19 K.5: 4 residues within 4Å: Chain B: F.445, D.446, T.448, V.460 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.448, B:V.460, H2O.40, H2O.42, H2O.44

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 37 residues within 4Å: Chain A: I.23, G.24, G.26, S.27, G.28, I.46, E.47, A.48, K.49, Q.50, G.53, T.54, C.55, V.58, G.59, C.60, K.63, G.126, F.127, A.128, A.151, T.152, G.153, Y.190, I.191, R.276, L.283, G.315, D.316, E.322, L.323, T.324, P.325, A.327 Chain B: H.452, P.453 Ligands: BDF.3 29 PLIP interactions: 27 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:I.191 Hydrogen bonds: A:S.27, A:S.27, A:G.28, A:A.48, A:K.49, A:T.54, A:T.54, A:C.55, A:K.63, A:A.128, A:A.128, A:D.316, A:E.322, A:T.324, A:T.324, A:T.324, B:H.452 Water bridges: A:G.26, A:G.29, A:Q.50, A:G.53, A:G.153, A:G.154, A:D.316, A:A.327, B:H.452 pi-Stacking: A:Y.190, A:Y.190 FAD.6: 37 residues within 4Å: Chain A: H.452, P.453 Chain B: I.23, G.24, G.26, S.27, G.28, I.46, E.47, A.48, K.49, Q.50, G.53, T.54, C.55, V.58, G.59, C.60, K.63, G.126, F.127, A.128, A.151, T.152, G.153, Y.190, I.191, R.276, L.283, G.315, D.316, E.322, L.323, T.324, P.325, A.327 Ligands: BDF.7 29 PLIP interactions: 27 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:I.191 Hydrogen bonds: B:S.27, B:S.27, B:G.28, B:A.48, B:K.49, B:T.54, B:T.54, B:C.55, B:K.63, B:A.128, B:A.128, B:Y.190, B:D.316, B:E.322, B:T.324, B:T.324, A:H.452 Water bridges: B:G.26, B:G.29, B:Q.50, B:G.53, B:G.153, B:G.154, B:G.154, B:A.327, A:H.452 pi-Stacking: B:Y.190, B:Y.190

2 x BDF: beta-D-fructopyranose(Non-covalent)

BDF.3: 9 residues within 4Å: Chain A: K.49, T.54, V.58, G.154, R.155, P.156, D.171, R.276 Ligands: FAD.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.49, A:T.54, A:D.171, A:R.276 Water bridges: A:R.276 BDF.7: 8 residues within 4Å: Chain B: T.54, V.58, G.154, R.155, P.156, D.171, R.276 Ligands: FAD.6 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.54, B:D.171, B:R.276 Water bridges: B:R.276

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: S.387, F.388, T.389 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.389, A:T.389 Water bridges: A:S.387, A:S.387, A:T.389 GOL.8: 2 residues within 4Å: Chain B: F.388, T.389 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.389, B:T.389, B:T.389 Water bridges: B:S.387, B:S.387

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 1.55 Angstrom Resolution Crystal Structure of Glutathione Reductase from Yersinia pestis in Complex with FAD. To Be Published

Release Date

2017-04-19

Peptides

Glutathione oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione oxidoreductase