SMTL ID : 5veb.1 (1 other biounit)

Crystal structure of a Fab binding to extracellular domain 5 of Cadherin-6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Post Translational Modification)

A2G.1: 6 residues within 4Å: Chain C: A.39, E.41, V.80, S.90, T.92 Ligands: A2G.2 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.41, C:S.90, C:S.90, C:S.90 A2G.2: 5 residues within 4Å: Chain C: E.41, T.92, G.93, T.94 Ligands: A2G.1 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bialucha, C.U. et al., Discovery and Optimization of HKT288, a Cadherin-6-Targeting ADC for the Treatment of Ovarian and Renal Cancers. Cancer Discov (2017)

Release Date

2017-06-07

Peptides

anti-CDH6 Fab heavy chain: A
anti-CDH6 Fab light chain: B
Cadherin-6: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
X

anti-CDH6 Fab heavy chain

anti-CDH6 Fab light chain

Cadherin-6

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