SMTL ID : 5veh.1

Re-refinement OF THE PDB STRUCTURE 1yiz of Aedes aegypti kynurenine aminotransferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

12 x BR: BROMIDE ION(Non-covalent)

BR.1: 4 residues within 4Å: Chain A: F.229, E.230, S.318, M.322 Ligand excluded by PLIP BR.2: 1 residues within 4Å: Chain A: Y.54 Ligand excluded by PLIP BR.3: 4 residues within 4Å: Chain A: G.242, M.243, W.244, E.245 Ligand excluded by PLIP BR.4: 3 residues within 4Å: Chain A: R.201, E.205, P.241 Ligand excluded by PLIP BR.5: 2 residues within 4Å: Chain A: N.41, Q.384 Ligand excluded by PLIP BR.6: 3 residues within 4Å: Chain A: D.200, R.201, A.202 Ligand excluded by PLIP BR.7: 2 residues within 4Å: Chain B: R.75 Ligands: BR.12 Ligand excluded by PLIP BR.9: 4 residues within 4Å: Chain B: F.229, E.230, S.318, M.322 Ligand excluded by PLIP BR.10: 3 residues within 4Å: Chain B: G.242, W.244, E.245 Ligand excluded by PLIP BR.11: 3 residues within 4Å: Chain B: E.139, P.140, K.143 Ligand excluded by PLIP BR.12: 4 residues within 4Å: Chain A: I.31 Chain B: G.76, Y.286 Ligands: BR.7 Ligand excluded by PLIP BR.13: 4 residues within 4Å: Chain B: N.41, G.43, Q.44, Q.384 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 6 residues within 4Å: Chain A: Y.37, T.378, K.379, S.380, V.381, G.382 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.37, A:S.380

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wlodawer, A. et al., Detect, correct, retract: How to manage incorrect structural models. FEBS J. (2018)

Release Date

2017-11-29

Peptides

Kynurenine aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Kynurenine aminotransferase