SMTL ID : 5vev.1 (1 other biounit)

Crystal Structure of Phosphoribosylamine-glycine Ligase from Neisseria gonorrhoeae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 8 residues within 4Å: Chain A: D.220, K.222, G.234, G.235, R.296, D.299, P.300, E.301 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.220, A:K.222, A:D.299

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: S.358, G.359, L.360, D.361 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.359, A:L.360, A:D.361, A:D.361 ACT.3: 4 residues within 4Å: Chain A: N.210, K.266 Ligands: EDO.4, EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.210 Water bridges: A:K.266 Salt bridges: A:K.266

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: N.210, H.211 Ligands: ACT.3, EDO.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.210 Water bridges: A:H.211, A:H.211, A:H.211, A:D.326 EDO.5: 4 residues within 4Å: Chain A: N.210, H.211 Ligands: ACT.3, EDO.4 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain A: A.216, R.308, W.332 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.308, A:R.308 Water bridges: A:P.334 EDO.7: 6 residues within 4Å: Chain A: A.39, P.40, L.56, T.57, Y.59, L.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.39, A:T.57 EDO.8: 3 residues within 4Å: Chain A: W.25, Q.29, K.368 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.29, A:K.368 Water bridges: A:W.25, A:A.28 EDO.9: 3 residues within 4Å: Chain A: Q.345, K.352, D.416 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.345, A:K.352 Water bridges: A:D.416, A:D.416 EDO.10: 4 residues within 4Å: Chain A: E.251, R.252, N.255, E.256 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.255 Water bridges: A:E.251, A:R.252

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 3 residues within 4Å: Chain A: Y.347, G.387, R.388 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.387, A:R.388 Water bridges: A:Y.347, A:R.388 Salt bridges: A:R.388

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dranow, D.M. et al., Crystal Structure of Phosphoribosylamine-glycine Ligase from Neisseria gonorrhoeae. To be Published

Release Date

2017-04-12

Peptides

Phosphoribosylamine--glycine ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoribosylamine--glycine ligase

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