SMTL ID : 5vf5.1 (1 other biounit)

Crystal structure of the vicilin from Solanum melongena, re-refinement

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: A.25, G.28 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.25, A:G.28

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: F.227, A.246, Y.259, N.261, R.266, K.351 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.259, A:Y.259, A:N.261 Salt bridges: A:R.266, A:K.351

1 x CU: COPPER (II) ION(Non-covalent)

CU.3: 5 residues within 4Å: Chain A: Y.12, C.281, P.282, H.283, H.325 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.281, A:H.283, A:H.325

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 4 residues within 4Å: Chain A: F.224, G.253, A.394, G.395 No protein-ligand interaction detected (PLIP)

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.5: 3 residues within 4Å: Chain A: D.365, R.366, E.367 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.366 Salt bridges: A:R.366, A:R.366

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wlodawer, A. et al., Detect, correct, retract: How to manage incorrect structural models. FEBS J. (2018)

Release Date

2017-12-06

Peptides

SM80.1 Vicilin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SM80.1 Vicilin

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