SMTL ID : 5vgo.1

Bruton's tyrosine kinase (BTK) with compound G-744

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: K.75 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.75, A:K.75 Salt bridges: A:K.75 SO4.2: 5 residues within 4Å: Chain A: S.201, K.204, Y.226, P.228, H.229 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.226, A:H.229 Water bridges: A:S.201, A:K.204, A:L.230 Salt bridges: A:K.204, A:H.229

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: R.171, M.205, E.208, R.209, F.210, T.211 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.171, A:R.209, A:F.210 Water bridges: A:R.209 GOL.4: 7 residues within 4Å: Chain A: R.129, S.152, Y.160, T.161, F.168, P.169, F.183 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.152, A:S.152, A:T.161 Water bridges: A:R.129

2 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.5: 2 residues within 4Å: Chain A: Y.34, Y.70 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.70 PG0.6: 4 residues within 4Å: Chain A: G.89, C.90, N.93 Ligands: 9B1.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.90

1 x 9B1: 2-[2-(hydroxymethyl)-3-{1-methyl-6-oxo-5-[(pyrimidin-4-yl)amino]-1,6-dihydropyridin-3-yl}phenyl]-6,6-dimethyl-3,4,6,7-tetrahydro-2H-cyclopenta[4,5]thieno[2,3-c]pyridin-1(5H)-one(Non-covalent)

9B1.7: 22 residues within 4Å: Chain A: L.17, T.19, G.20, Q.21, F.22, V.25, A.37, K.39, T.83, E.84, Y.85, M.86, A.87, G.89, D.130, N.135, L.137, S.147, D.148, S.152, Y.160 Ligands: PG0.6 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.17, A:L.17, A:F.22, A:V.25, A:V.25, A:D.130, A:Y.160 Hydrogen bonds: A:K.39, A:M.86, A:M.86, A:S.147, A:S.147 Water bridges: A:G.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., Discovery of Potent and Selective Tricyclic Inhibitors of Bruton's Tyrosine Kinase with Improved Druglike Properties. ACS Med Chem Lett (2017)

Release Date

2017-07-05

Peptides

Tyrosine-protein kinase BTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase BTK

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