SMTL ID : 5vi7.1

Crystal structure of the Zika virus NS3 helicase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: P.22, G.23, K.26, E.112, A.143, G.241, R.285, R.288 Ligands: SO4.6 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.23, A:E.112 Water bridges: A:K.26, A:A.143, A:R.285, A:R.285 Salt bridges: A:K.26, A:R.285, A:R.288 SO4.2: 2 residues within 4Å: Chain A: R.149, E.305 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.149 Salt bridges: A:R.149 SO4.3: 6 residues within 4Å: Chain A: S.191, V.192, S.213, R.214, T.235, I.237 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.214, A:T.235, A:T.235 Water bridges: A:V.192, A:V.192, A:K.215 Salt bridges: A:R.214 SO4.4: 5 residues within 4Å: Chain A: P.146, G.147, T.148, R.149, K.340 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.147, A:T.148 Water bridges: A:R.149, A:R.149, A:P.336, A:K.340, A:K.340 Salt bridges: A:R.149, A:K.340 SO4.5: 3 residues within 4Å: Chain A: R.386, F.389, R.414 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.414 SO4.6: 8 residues within 4Å: Chain A: G.23, G.25, K.26, T.27, R.28, E.57, R.288 Ligands: SO4.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.25, A:K.26, A:T.27, A:T.27, A:R.28, A:E.57, A:R.288 Water bridges: A:R.28, A:R.28 Salt bridges: A:R.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bukrejewska, M. et al., Crystal structures of the methyltransferase and helicase from the ZIKA 1947 MR766 Uganda strain. Acta Crystallogr D Struct Biol (2017)

Release Date

2017-09-06

Peptides

helicase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

helicase