SMTL ID : 5vin.2 (1 other biounit)

Crystal Structure of the R515Q missense variant of human PGM1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: H.141, S.401, R.450 Ligands: GOL.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.401 Salt bridges: A:H.141, A:R.450 SO4.2: 5 residues within 4Å: Chain A: T.42, S.43, G.381, W.382, K.412 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.42, A:W.382 Water bridges: A:S.43, A:S.43, A:G.381, A:G.381, A:K.412, A:K.412 Salt bridges: A:K.412 SO4.3: 1 residues within 4Å: Chain A: S.229 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.229 SO4.4: 3 residues within 4Å: Chain A: A.266, P.267, A.268 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.266, A:A.268

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: G.41, T.42, S.43, T.530 Ligands: GOL.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.42, A:S.43 GOL.6: 7 residues within 4Å: Chain A: T.380, R.450, R.526, S.528, T.530 Ligands: SO4.1, GOL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.380, A:R.450, A:R.526

1 x CO: COBALT (II) ION(Non-covalent)

CO.7: 4 residues within 4Å: Chain A: S.140, D.311, D.313, D.315 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:S.140, A:D.311, A:D.313, A:D.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stiers, K.M. et al., A Hotspot for Disease-Associated Variants of Human PGM1 Is Associated with Impaired Ligand Binding and Loop Dynamics. Structure (2018)

Release Date

2018-06-27

Peptides

Phosphoglucomutase-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Phosphoglucomutase-1

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