SMTL ID : 5vj0.1 (1 other biounit)

Crystal Structure of heme-containing DyP Type Peroxidase from Enterobacter lignolyticus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: D.156, F.160, V.161, D.162, G.163, T.164, E.165, F.191, Q.193, W.195, H.197, R.216, H.234, L.235, V.238, I.249, R.251, L.265, F.267, Q.280, L.281, M.284, M.295 23 PLIP interactions: 23 interactions with chain A, Hydrophobic interactions: A:F.160, A:F.191, A:W.195, A:W.195, A:L.235, A:V.238, A:V.238, A:I.249, A:I.249, A:L.265, A:F.267, A:F.267, A:Q.280, A:L.281 Hydrogen bonds: A:D.162, A:G.163, A:E.165 Water bridges: A:K.248 Salt bridges: A:K.248, A:R.251 pi-Stacking: A:F.267 pi-Cation interactions: A:R.251 Metal complexes: A:H.234 HEM.2: 24 residues within 4Å: Chain B: D.156, F.160, V.161, D.162, G.163, T.164, E.165, Q.193, W.195, H.197, R.216, H.234, L.235, V.238, D.239, I.249, R.251, L.265, F.267, Q.280, L.281, M.284, M.295, T.299 24 PLIP interactions: 24 interactions with chain B, Hydrophobic interactions: B:F.160, B:W.195, B:W.195, B:L.235, B:V.238, B:V.238, B:I.249, B:L.265, B:F.267, B:F.267, B:F.267, B:Q.280, B:L.281, B:T.299 Hydrogen bonds: B:D.162, B:D.162, B:G.163, B:T.164, B:E.165 Water bridges: B:K.248 Salt bridges: B:R.251 pi-Stacking: B:F.267 pi-Cation interactions: B:R.251 Metal complexes: B:H.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shrestha, R. et al., Mechanistic Insights into Dye-Decolorizing Peroxidase Revealed by Solvent Isotope and Viscosity Effects. ACS Catal (2017)

Release Date

2017-08-16

Peptides

Dyp-type peroxidase family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dyp-type peroxidase family

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