SMTL ID : 5vj3.1

HIV Protease (PR) in open form with Mg2+ in active site and HIVE-9 in eye site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x HV9: 4-methyl-N-({1-[4-(trifluoromethyl)pyrimidin-2-yl]piperidin-4-yl}carbamoyl)benzene-1-sulfonamide(Non-covalent)

HV9.1: 15 residues within 4Å: Chain A: V.32, I.47, G.48, I.54, V.56, P.79, T.80, P.81 Chain B: V.32, I.50, T.80, P.81, V.82, I.84 Ligands: HV9.3 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:I.47, A:I.54, B:V.32, B:P.81, B:V.82, B:I.84 HV9.3: 15 residues within 4Å: Chain A: V.32, I.50, T.80, P.81, V.82, I.84 Chain B: V.32, I.47, G.48, I.54, V.56, P.79, T.80, P.81 Ligands: HV9.1 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:I.47, B:I.54, A:V.32, A:P.81, A:V.82, A:I.84

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain B: D.25 Ligands: MG.4 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain A: D.25 Ligands: MG.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Forli, S. et al., Fragment-based campaign for the identification of potential exosite binders of HIV-1 Protease. to be published

Release Date

2018-04-18

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protease

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