SMTL ID : 5vj7.1

Ferredoxin NADP Oxidoreductase (Xfn)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SF4: IRON/SULFUR CLUSTER(Covalent)(Non-covalent)

SF4.1: 10 residues within 4Å: Chain A: C.56, I.60, T.97, C.101, Q.103, Q.106, C.107, I.122, E.126, I.454 7 PLIP interactions: 7 interactions with chain A, Salt bridges: A:E.126, A:E.126, A:E.126 Metal complexes: A:C.56, A:C.101, A:C.107, A:E.126 SF4.2: 8 residues within 4Å: Chain A: C.42, L.43, C.45, C.52, C.111, V.112, V.113, I.120 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.42, A:C.45, A:C.52, A:C.111

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)(Non-covalent)

FAD.3: 38 residues within 4Å: Chain A: V.100, C.101, I.160, G.161, A.162, G.163, P.164, A.165, Y.183, E.184, A.185, L.186, G.191, V.192, Y.195, G.196, I.197, R.201, H.225, I.226, V.227, G.246, T.247, G.248, N.269, L.272, N.303, T.304, D.307, R.333, Q.406, L.412, G.444, D.445, A.451, T.452, V.453, A.456 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:V.192, A:I.197, A:L.272, A:N.303, A:T.304 Hydrogen bonds: A:V.100, A:A.162, A:G.163, A:A.165, A:E.184, A:E.184, A:A.185, A:L.186, A:V.192, A:R.201, A:R.201, A:V.227, A:V.227, A:A.249, A:D.445, A:T.452, A:V.453 Water bridges: A:G.191, A:G.248, A:N.303, A:A.446, A:T.452 FAD.4: 26 residues within 4Å: Chain B: F.33, E.43, R.44, I.45, P.46, L.47, T.48, I.62, V.63, F.64, R.66, G.67, T.69, T.70, T.109, E.113, D.218, L.219, H.220, P.221, I.222, M.223, P.249, V.265, E.272 Ligands: MG.6 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:P.46, B:P.46, B:H.220, B:P.249 Hydrogen bonds: B:T.48, B:T.48, B:I.62, B:F.64, B:R.66, B:G.67, B:T.69, B:T.70, B:E.113, B:M.223, B:M.223, B:E.272 Water bridges: B:K.68, B:K.68 pi-Stacking: B:H.220

1 x FES: FE2/S2 (INORGANIC) CLUSTER(Covalent)

FES.5: 10 residues within 4Å: Chain B: M.223, V.224, D.225, G.226, G.228, M.229, C.230, G.231, C.233, C.245 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:D.225, B:C.230, B:C.233, B:C.245

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 2 residues within 4Å: Chain B: E.43 Ligands: FAD.4 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:E.43, FAD.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, D.M.N. et al., Two functionally distinct NADP(+)-dependent ferredoxin oxidoreductases maintain the primary redox balance of Pyrococcus furiosus. J. Biol. Chem. (2017)

Release Date

2017-07-19

Peptides

Oxidoreductase: A
Ferredoxin-NADP(+) reductase subunit alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Oxidoreductase

Ferredoxin-NADP(+) reductase subunit alpha