SMTL ID : 5vkt.1 (1 other biounit)

Cinnamyl alcohol dehydrogenases (SbCAD4) from Sorghum bicolor (L.) Moench

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.47, T.49, H.69, C.165 Ligands: FMT.4, NAP.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.47, A:H.69, A:C.165 ZN.2: 8 residues within 4Å: Chain A: S.99, C.100, R.101, T.102, C.103, C.106, C.114, P.115 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.100, A:C.103, A:C.106, A:C.114 ZN.7: 8 residues within 4Å: Chain B: S.99, C.100, R.101, T.102, C.103, C.106, C.114, P.115 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.100, B:C.103, B:C.106, B:C.114 ZN.8: 6 residues within 4Å: Chain B: C.47, T.49, H.69, E.70, C.165, R.347 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.47, B:H.69, B:E.70, B:C.165, H2O.17

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 13 residues within 4Å: Chain A: V.93, G.94, Y.95, F.96, F.147, V.149, L.164, V.168, V.302, G.303, S.304, V.305, C.308 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.94, A:F.147, A:G.303

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 8 residues within 4Å: Chain A: C.47, T.49, H.69, Y.95, C.165, V.302 Ligands: ZN.1, NAP.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.49

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.5: 32 residues within 4Å: Chain A: C.47, H.48, T.49, H.52, W.58, C.165, A.166, T.169, G.190, L.191, G.192, G.193, L.194, S.213, S.214, S.215, K.218, T.253, V.254, S.255, A.256, V.276, G.277, A.278, N.300, G.301, V.302, L.339, N.342, R.347 Ligands: ZN.1, FMT.4 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:T.169, A:L.194 Hydrogen bonds: A:H.48, A:T.49, A:H.52, A:L.191, A:G.193, A:L.194, A:S.213, A:S.214, A:S.214, A:S.214, A:S.215, A:S.215, A:K.218, A:S.255, A:V.276, A:A.278, A:V.302, A:N.342 Water bridges: A:G.190, A:G.190, A:L.191, A:G.192, A:G.195, A:S.255, A:G.257, A:N.342, A:N.342, A:N.342, A:R.347 Salt bridges: A:H.48, A:K.218, A:R.347

1 x MLT: D-MALATE(Non-covalent)

MLT.6: 8 residues within 4Å: Chain A: S.99, R.101, C.106, G.109, E.111, D.146, F.147, V.305 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:E.111 Hydrogen bonds: A:S.99, A:R.101 Water bridges: A:E.111, A:A.306 Salt bridges: A:R.101, A:R.101

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.9: 6 residues within 4Å: Chain B: G.190, L.191, S.213, S.214, K.218, V.254 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.254 Hydrogen bonds: B:S.213, B:S.214 Water bridges: B:L.191, B:S.214 Salt bridges: B:K.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jun, S.Y. et al., The Enzyme Activity and Substrate Specificity of Two Major Cinnamyl Alcohol Dehydrogenases in Sorghum (Sorghum bicolor), SbCAD2 and SbCAD4. Plant Physiol. (2017)

Release Date

2017-08-09

Peptides

Cinnamyl alcohol dehydrogenases (SbCAD4): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cinnamyl alcohol dehydrogenases (SbCAD4)

Related Entries With Identical Sequence