- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.59 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x HIS: HISTIDINE(Non-covalent)
HIS.2: 16 residues within 4Å:- Chain A: L.142, S.144, S.245, Q.267, H.270, E.335, H.336, E.365, D.369, Y.370, H.376
- Chain B: E.423, L.425, H.428
- Ligands: ZN.1, NAD.3
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:H.376
- Hydrogen bonds: A:S.144, A:S.245, A:S.245, A:D.369, B:E.423
- Salt bridges: A:H.336, A:H.376
HIS.5: 16 residues within 4Å:- Chain A: E.423, L.425, H.428
- Chain B: L.142, S.144, S.245, Q.267, H.270, E.335, H.336, E.365, D.369, Y.370, H.376
- Ligands: ZN.4, NAD.6
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:H.376
- Hydrogen bonds: B:S.144, B:S.245, B:S.245, B:E.365, B:D.369, A:E.423
- Salt bridges: B:H.336, B:H.376
- pi-Cation interactions: B:H.270
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.3: 28 residues within 4Å:- Chain A: F.64, D.65, Y.134, P.136, G.137, G.138, T.139, A.140, L.142, P.166, G.194, Q.196, P.217, G.218, N.219, Y.221, V.222, A.242, G.243, P.244, S.245, H.270, E.335, H.376, V.377, L.378, T.380
- Ligands: HIS.2
19 PLIP interactions:18 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:P.217, A:P.217, H.2
- Hydrogen bonds: A:D.65, A:Y.134, A:G.137, A:G.138, A:T.139, A:A.140, A:A.140, A:Q.196, A:N.219, A:N.219, A:S.245, A:H.270, A:L.378, A:L.378
- pi-Stacking: A:F.64, A:Y.221
NAD.6: 29 residues within 4Å:- Chain B: F.64, D.65, Y.134, P.136, G.137, G.138, T.139, A.140, L.142, P.166, G.193, G.194, Q.196, P.217, G.218, N.219, Y.221, V.222, A.242, G.243, P.244, S.245, H.270, E.335, H.376, V.377, L.378, T.380
- Ligands: HIS.5
20 PLIP interactions:19 interactions with chain B, 1 Ligand-Ligand interactions- Hydrophobic interactions: B:P.217, B:P.217, H.5
- Hydrogen bonds: B:D.65, B:Y.134, B:Y.134, B:G.137, B:G.138, B:T.139, B:A.140, B:Q.196, B:N.219, B:N.219, B:S.245, B:H.270, B:E.335, B:L.378, B:L.378
- pi-Stacking: B:F.64, B:Y.221
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ruszkowski, M. et al., Structures of Medicago truncatula L-Histidinol Dehydrogenase Show Rearrangements Required for NAD(+) Binding and the Cofactor Positioned to Accept a Hydride. Sci Rep (2017)
- Release Date
- 2017-09-20
- Peptides
- Histidinol dehydrogenase, chloroplastic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.59 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x HIS: HISTIDINE(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ruszkowski, M. et al., Structures of Medicago truncatula L-Histidinol Dehydrogenase Show Rearrangements Required for NAD(+) Binding and the Cofactor Positioned to Accept a Hydride. Sci Rep (2017)
- Release Date
- 2017-09-20
- Peptides
- Histidinol dehydrogenase, chloroplastic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
F