SMTL ID : 5vlp.1

PCSK9 complex with LDLR antagonist peptide and Fab7G7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 1 residues within 4Å: Chain A: G.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.106 NA.2: 7 residues within 4Å: Chain A: A.328, A.330, P.331, V.333, T.335, C.358, D.360 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.335, A:D.360

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Discovery of a cryptic peptide-binding site on PCSK9 and design of antagonists. Nat. Struct. Mol. Biol. (2017)

Release Date

2017-08-16

Peptides

Proprotein convertase subtilisin/kexin type 9: A
Fab7G7 heavy chain: B
Fab7G7 light chain: C
LDLR antagonist peptide: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

D
Z

Proprotein convertase subtilisin/kexin type 9

Fab7G7 heavy chain

Fab7G7 light chain

LDLR antagonist peptide

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