SMTL ID : 5vnb.2 (3 other biounits)

YEATS in complex with histone H3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Ligands: EDO.3, EDO.5, EDO.6 No protein-ligand interaction detected (PLIP) EDO.2: 1 residues within 4Å: Chain A: W.93 No protein-ligand interaction detected (PLIP) EDO.3: 3 residues within 4Å: Chain A: A.127, M.128 Ligands: EDO.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.127 EDO.4: 2 residues within 4Å: Chain A: D.124 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.124 EDO.5: 3 residues within 4Å: Chain A: Q.122 Ligands: EDO.1, EDO.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.45, A:Q.122 EDO.6: 5 residues within 4Å: Chain A: D.124, A.127 Ligands: EDO.1, EDO.4, EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.124

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 2 residues within 4Å: Chain A: E.87 Ligands: SO4.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.87 Salt bridges: A:E.87 SO4.8: 5 residues within 4Å: Chain A: T.48, Y.50, K.52, E.87 Ligands: SO4.7 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.50 Salt bridges: A:K.52 SO4.9: 3 residues within 4Å: Chain A: K.131, K.132, T.133 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.132, A:T.133, A:T.133, A:T.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, H.J. et al., GAS41 Recognizes Diacetylated Histone H3 through a Bivalent Binding Mode. ACS Chem. Biol. (2018)

Release Date

2018-09-05

Peptides

YEATS domain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

YEATS domain-containing protein 4

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