SMTL ID : 5vnr.1

X-ray structure of perdeuterated T4 lysozyme cysteine-free pseudo-wild type at cryogenic temperature

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: R.125, W.126, D.127, E.128 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:W.126, A:D.127, A:D.127, A:E.128, A:E.128, A:E.128, A:E.128

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: E.11, Y.18 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.11, A:E.11, A:Y.18

1 x HED: 2-HYDROXYETHYL DISULFIDE(Non-covalent)

HED.3: 4 residues within 4Å: Chain A: F.4, N.68, D.72, V.75 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: T.142, P.143, N.144, R.145 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: H.31, A.49 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 2 residues within 4Å: Chain A: L.79, D.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.89 Water bridges: A:D.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, L. et al., Neutron crystallographic studies of T4 lysozyme at cryogenic temperature. Protein Sci. (2017)

Release Date

2017-07-26

Peptides

Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endolysin

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