SMTL ID : 5vp9.1

Crystal structure of HCV NS3/4A protease in complex with AM-07, an analogue of 5172-mcP1P3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x 9H7: tert-butyl [(2R,6S,12Z,13aS,14aR,16aS)-14a-[(cyclopropylsulfonyl)carbamoyl]-5,16-dioxo-2-{[3-(thiophen-2-yl)quinoxalin-2-yl]oxy}-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl]carbamate(Non-covalent)

9H7.1: 22 residues within 4Å: Chain A: Q.62, T.63, F.64, V.76, Y.77, H.78, G.79, V.99, D.102, R.144, I.153, L.156, K.157, G.158, S.159, S.160, F.175, R.176, A.177, A.178, V.179, D.189 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Q.62, A:F.64, A:Y.77, A:H.78, A:V.99, A:D.102, A:F.175, A:A.178 Hydrogen bonds: A:H.78, A:G.158, A:S.159, A:S.160, A:S.160, A:R.176, A:A.178, A:A.178 Water bridges: A:K.157

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: Y.27, Q.29, Q.30 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.29

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 6 residues within 4Å: Chain A: C.118, T.119, C.120, C.166, A.168, H.170 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.118, A:C.120, A:C.166, A:H.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matthew, A.N. et al., Hepatitis C Virus NS3/4A Protease Inhibitors Incorporating Flexible P2 Quinoxalines Target Drug Resistant Viral Variants. J. Med. Chem. (2017)

Release Date

2017-06-21

Peptides

NS4A cofactor -- NS3 protein chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NS4A cofactor -- NS3 protein chimera

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