SMTL ID : 5vpk.1 (2 other biounits)

CRYSTAL STRUCTURE OF MITE ALLERGEN DER F 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: Q.102, Q.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.103 SO4.2: 4 residues within 4Å: Chain A: N.53, T.54, S.55 Ligands: NAG.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.55 SO4.4: 2 residues within 4Å: Chain A: G.156, Y.204 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.157 SO4.5: 2 residues within 4Å: Chain A: T.76, P.78 No protein-ligand interaction detected (PLIP) SO4.6: 4 residues within 4Å: Chain A: A.131, Q.134, T.135, V.220 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.134

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.53 Ligands: SO4.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chruszcz, M. et al., Crystal Structures Of Mite Allergens Der F 1 And Der P 1 Reveal Differences In Surface-Exposed Residues That May Influence Antibody Binding. J.Mol.Biol. (2009)

Release Date

2017-05-24

Peptides

Der f 1 variant: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Der f 1 variant

Related Entries With Identical Sequence