SMTL ID : 5vt4.1 (1 other biounit)

Sco GlgEI-V279S in complex with a pyrolidene-based methyl-phosphonate compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.21 Å

Oligo State

homo-dimer

Ligands

2 x 9KJ: {[(2R,3R,4R,5R)-3-(alpha-D-glucopyranosyloxy)-4-hydroxy-2,5-bis(hydroxymethyl)pyrrolidin-1-yl]methyl}phosphonic acid(Non-covalent)

9KJ.1: 18 residues within 4Å: Chain A: K.264, N.268, S.279, W.281, A.282, Q.324, N.352, K.355, K.356, Y.357, D.359, R.392, D.394, N.395, E.423, D.480, K.534, Y.535 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:K.264, A:S.279, A:W.281, A:Q.324, A:Q.324, A:N.352, A:R.392, A:R.392, A:D.394, A:D.394, A:N.395, A:E.423, A:E.423, A:D.480, A:Y.535, A:Y.535, A:Y.535 Water bridges: A:N.268, A:K.355 Salt bridges: A:D.394, A:E.423, A:D.480, A:K.534 9KJ.2: 18 residues within 4Å: Chain B: K.264, N.268, S.279, W.281, A.282, Q.324, N.352, K.355, K.356, Y.357, D.359, R.392, D.394, N.395, E.423, D.480, K.534, Y.535 24 PLIP interactions: 24 interactions with chain B Hydrogen bonds: B:K.264, B:S.279, B:W.281, B:W.281, B:Q.324, B:Q.324, B:N.352, B:Y.357, B:Y.357, B:R.392, B:R.392, B:D.394, B:N.395, B:E.423, B:D.480, B:D.480, B:Y.535, B:Y.535 Water bridges: B:N.268, B:K.355 Salt bridges: B:D.394, B:E.423, B:D.480, B:K.534

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Veleti, S.K. et al., Zwitterionic pyrrolidene-phosphonates: inhibitors of the glycoside hydrolase-like phosphorylase Streptomyces coelicolor GlgEI-V279S. Org. Biomol. Chem. (2017)

Release Date

2017-06-07

Peptides

Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1

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