SMTL ID : 5vts.1 (1 other biounit)

Dehaloperoxidase B Y28F mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 20 residues within 4Å: Chain A: F.24, E.31, N.34, F.35, K.51, H.55, K.58, V.59, M.63, L.83, M.86, Q.88, H.89, L.92, N.96, F.97, L.100, F.101, L.127 Ligands: OXY.2 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:F.24, A:F.35, A:V.59, A:L.83, A:Q.88, A:L.92, A:F.97, A:F.97, A:L.100, A:F.101, A:L.127 Hydrogen bonds: A:Q.88 Water bridges: A:N.37 Salt bridges: A:K.51, A:H.55 pi-Stacking: A:H.55 Metal complexes: A:H.89

1 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.2: 5 residues within 4Å: Chain A: F.21, F.35, H.55, V.59 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.55

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: R.10, E.65, D.68, R.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.10, A:R.10, A:D.68, A:R.69 GOL.4: 6 residues within 4Å: Chain A: Q.4, D.5, T.8, Q.113, S.114, F.115 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.4, A:D.5, A:T.8, A:T.8, A:S.114 Water bridges: A:D.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carey, L.M., Probing the Structure-Function Relationship of a Multifunctional Enzyme using Crystallographic Diffraction Methods. Thesis, North Carolina State University (2017)

Release Date

2018-05-23

Peptides

Dehaloperoxidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dehaloperoxidase B

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