SMTL ID : 5vtv.2 (3 other biounits)

Crystal structure of the A/Hong Kong/1/1968 (H3N2) influenza virus hemagglutinin G225M/L226T/S228A mutant in complex with 3'-SLN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.32 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain A: S.39, N.279, V.291, N.292 Chain B: E.69 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 3 residues within 4Å: Chain A: N.159, T.161, V.236 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.161, A:V.236

1 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)

GAL-SIA.4: 13 residues within 4Å: Chain A: Y.92, G.128, G.129, S.130, N.131, W.147, T.149, H.177, E.184, L.188, W.216, M.219, A.222 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.147, A:T.149 Hydrogen bonds: A:Y.92, A:G.129, A:N.131, A:N.131, A:E.184

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: Q.74, N.75, F.114 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, N.C. et al., Diversity of Functionally Permissive Sequences in the Receptor-Binding Site of Influenza Hemagglutinin. Cell Host Microbe (2017)

Release Date

2017-06-28

Peptides

Hemagglutinin HA1 chain: A
Hemagglutinin HA2 chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

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