SMTL ID : 5vu7.1

TNA polymerase, open ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: E.580, Y.583 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.460, K.464, K.487 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.460, A:K.464, A:K.487

1 x FA2: 5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXYTETRAHYDROFURAN-3-YL DIHYDROGEN PHOSPHATE(Non-covalent)

FA2.3: 10 residues within 4Å: Chain A: F.405, S.407, L.408, Y.409, Y.494, T.541, D.542 Chain B: T.4, T.5 Chain C: X.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.407, A:L.408, A:Y.409, A:D.542

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chim, N. et al., Structural basis for TNA synthesis by an engineered TNA polymerase. Nat Commun (2017)

Release Date

2017-12-06

Peptides

DNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase

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