SMTL ID : 5vua.1

Pim1 Kinase in complex with a benzofuranone inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: F.103, I.106, D.143, D.207, G.211, D.212 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.212, A:D.212 Water bridges: A:T.107

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain A: S.233, S.234 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.234, A:S.234 Water bridges: A:E.235

1 x 8GX: (2Z)-6-methoxy-7-(piperazin-1-ylmethyl)-2-(1H-pyrrolo[2,3-c]pyridin-3-ylmethylidene)-1-benzofuran-3-one(Non-covalent)

8GX.3: 17 residues within 4Å: Chain A: L.17, G.18, S.19, F.22, V.25, A.38, K.40, E.62, I.77, L.93, E.94, R.95, D.101, E.144, L.147, I.158, D.159 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.22, A:A.38, A:L.93, A:I.158, A:I.158 Hydrogen bonds: A:E.94, A:D.101, A:D.101, A:D.159 Water bridges: A:E.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watanabe, C. et al., Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach. J Chem Inf Model (2017)

Release Date

2017-12-13

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Serine/threonine-protein kinase pim-1

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