SMTL ID : 5vuc.1

Pim1 Kinase in complex with a benzofuranone inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: F.103, I.106, D.143, D.207, G.211, D.212 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.212, A:D.212

1 x 8GR: (2Z)-2-(1H-indol-3-ylmethylidene)-6-methoxy-7-(piperazin-1-ylmethyl)-1-benzofuran-3-one(Non-covalent)

8GR.2: 15 residues within 4Å: Chain A: L.17, G.18, S.19, F.22, V.25, A.38, K.40, L.93, E.94, R.95, D.101, E.144, L.147, I.158, D.159 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.17, A:F.22, A:A.38, A:L.93, A:R.95, A:L.147 Hydrogen bonds: A:E.94, A:D.101, A:E.144 Water bridges: A:D.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watanabe, C. et al., Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach. J Chem Inf Model (2017)

Release Date

2017-12-13

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Serine/threonine-protein kinase pim-1

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