SMTL ID : 5vvi.1 (1 other biounit)

Crystal Structure of the Ligand Binding Domain of LysR-type Transcriptional Regulator, OccR from Agrobacterium tumefaciens in the Complex with Octopine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

2 x 6DB: octopine(Non-covalent)

6DB.1: 13 residues within 4Å: Chain A: M.10, P.11, A.12, P.40, S.41, D.59, Q.105, F.111, S.131, L.132, S.133, D.150, E.173 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:A.12, A:S.41, A:D.59, A:D.59, A:S.133, A:E.173 Water bridges: A:G.60, A:F.111, A:H.134, A:D.150 Salt bridges: A:D.59, A:D.150 6DB.3: 13 residues within 4Å: Chain B: M.10, P.11, A.12, P.40, S.41, D.59, Q.105, F.111, S.131, L.132, S.133, D.150, E.173 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:A.12, B:S.41, B:D.59, B:D.59, B:D.59, B:S.133, B:E.173 Water bridges: B:G.60, B:F.111, B:H.134 Salt bridges: B:D.59, B:D.150

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 11 residues within 4Å: Chain A: P.11, G.38, L.39, P.40, L.132 Chain B: P.11, G.38, L.39, P.40, L.132 Ligands: EDO.4 No protein-ligand interaction detected (PLIP) EDO.4: 11 residues within 4Å: Chain A: P.11, G.38, L.39, P.40, L.132 Chain B: P.11, G.38, L.39, P.40, L.132 Ligands: EDO.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the Ligand-Binding Domain of a LysR-type Transcriptional Regulator: Transcriptional Activation via a Rotary Switch. Mol. Microbiol. (2018)

Release Date

2017-06-21

Peptides

Octopine catabolism/uptake operon regulatory protein OccR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Octopine catabolism/uptake operon regulatory protein OccR

Related Entries With Identical Sequence