SMTL ID : 5vx5.1

VP8* of a G2P[4] Human Rotavirus in complex with LNFP1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

monomer

Ligands

1 x BGC- GAL- NAG- GAL- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-NAG-GAL-FUC.1: 10 residues within 4Å: Chain A: L.106, Y.108, G.109, R.111, W.113, T.123, T.124, R.148, E.151, N.155 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.111, A:T.124, A:T.124, A:T.124, A:N.155, A:T.124, A:R.148, A:E.151 Water bridges: A:R.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, L. et al., Glycan recognition in globally dominant human rotaviruses. Nat Commun (2018)

Release Date

2018-07-18

Peptides

Outer capsid protein VP4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Outer capsid protein VP4

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