SMTL ID : 5vxa.2 (2 other biounits)

Structure of the human Mesh1-NADPH complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.36, H.62, D.63, D.123 Ligands: NDP.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.36, A:H.62, A:D.63, A:D.123, H2O.1

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.2: 18 residues within 4Å: Chain A: R.25, K.26, D.27, Y.33, H.36, D.63, E.66, K.67, K.98, K.102, D.123, N.127, D.130, L.131, W.139, R.143, Y.147 Ligands: ZN.1 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:R.25, A:R.25, A:K.26, A:Y.33, A:D.123, A:N.127, A:Y.147 Water bridges: A:K.26, A:K.26, A:K.26, A:K.67, A:D.130, A:R.133, A:R.133, A:R.143, A:R.143 Salt bridges: A:H.36, A:K.67, A:K.102, A:K.102, A:R.143 pi-Cation interactions: A:R.25, A:R.25

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: Q.23, R.24 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.24

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 2 residues within 4Å: Chain A: R.133, C.134 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.133

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.129, A:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ding, C.C. et al., MESH1 is a cytosolic NADPH phosphatase that regulates ferroptosis. Nat Metab (2020)

Release Date

2018-05-23

Peptides

Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1

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