SMTL ID : 5vxe.1

Crystal structure of Xanthomonas campestris OleA E117A bound with Cerulenin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-dimer

Ligands

2 x CER: (2S, 3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE(Non-covalent)

CER.1: 10 residues within 4Å: Chain A: A.142, C.143, L.253, H.285, V.287, H.291, N.315, I.345, G.346, S.347 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.253, A:L.253, A:V.287, A:H.291, A:I.345, A:I.345 Hydrogen bonds: A:C.143, A:N.315, A:N.315, A:S.347, A:S.347 Water bridges: A:S.347 CER.4: 10 residues within 4Å: Chain B: A.142, C.143, L.253, H.285, V.287, H.291, N.315, I.345, G.346, S.347 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.253, B:L.253, B:V.287, B:H.291, B:I.345, B:I.345 Hydrogen bonds: B:C.143, B:N.315, B:N.315, B:S.347, B:S.347 Water bridges: B:S.347

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: Q.87 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.87 GOL.5: 1 residues within 4Å: Chain B: Q.87 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.87

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 2 residues within 4Å: Chain A: H.38, D.76 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.38, A:D.76, H2O.1 MN.6: 2 residues within 4Å: Chain B: H.38, D.76 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.38, B:D.76, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jensen, M.R. et al., OleA Glu117 is key to condensation of two fatty-acyl coenzyme A substrates in long-chain olefin biosynthesis. Biochem. J. (2017)

Release Date

2017-10-25

Peptides

3-oxoacyl-[ACP] synthase III: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3-oxoacyl-[ACP] synthase III

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