SMTL ID : 5vyg.3 (2 other biounits)

Crystal structure of hFA9 EGF repeat with O-glucose trisaccharide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x BGC- XYS- XYS: alpha-D-xylopyranose-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranose(Post Translational Modification)

BGC-XYS-XYS.1: 6 residues within 4Å: Chain A: Q.8, S.11, N.25, S.26, Y.27, K.38 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.39 Hydrogen bonds: A:Y.27

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.5, G.6, Q.8, D.22, D.23, N.25 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.5, A:G.6, A:D.22, A:D.22, A:D.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takeuchi, H. et al., O-Glycosylation modulates the stability of epidermal growth factor-like repeats and thereby regulates Notch trafficking. J. Biol. Chem. (2017)

Release Date

2017-08-09

Peptides

Coagulation factor IX: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Coagulation factor IX

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