SMTL ID : 5vzu.1 (1 other biounit)

Crystal structure of the Skp1-FBXO31-cyclin D1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.155, H.163, C.179, H.185 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.155, B:H.163, B:C.179, B:H.185

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain B: I.119, R.142, M.156 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.142 PO4.3: 3 residues within 4Å: Chain B: H.271, R.276, D.477 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.271, B:R.276 PO4.4: 3 residues within 4Å: Chain B: R.186, R.191, Q.228 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.228, B:Q.228 Salt bridges: B:R.186, B:R.191 PO4.5: 1 residues within 4Å: Chain B: R.191 No protein-ligand interaction detected (PLIP) PO4.6: 3 residues within 4Å: Chain B: W.121, Y.123, F.137 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Structural basis of the phosphorylation-independent recognition of cyclin D1 by the SCFFBXO31 ubiquitin ligase. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-01-17

Peptides

S-phase kinase-associated protein 1: A
F-box only protein 31: B
Cyclin D1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

S-phase kinase-associated protein 1

F-box only protein 31

Cyclin D1

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