SMTL ID : 5w0c.1

Cytochrome P450 (CYP) 2C9 TCA007 Inhibitor Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: R.80, I.95, V.96, W.103, L.277, A.280, G.281, T.284, T.285, T.288, Q.339, L.344, L.345, S.348, L.349, H.351, P.410, F.411, S.412, R.416, C.418, V.419, G.420, L.423, A.424 19 PLIP interactions: 18 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:I.95, A:V.96, A:L.277, A:L.344, A:L.345, A:L.349, A:F.411, A:F.411, A:V.419, A:L.423 Hydrogen bonds: A:V.96, A:S.348, A:S.412 Salt bridges: A:R.80, A:R.80, A:H.351, A:R.416 Metal complexes: A:C.418, H2O.3

1 x 9W6: ethyl {2-[([1,3]thiazolo[4,5-c]pyridine-2-carbonyl)amino]thiophene-3-carbonyl}carbamate(Non-covalent)

9W6.2: 14 residues within 4Å: Chain A: F.83, L.85, A.86, A.89, R.91, V.96, F.97, L.191, L.216, V.220, G.279, A.280, L.349, F.459 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.83, A:L.85, A:A.86, A:L.216 Hydrogen bonds: A:A.86, A:R.91 pi-Stacking: A:F.97

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: I.188, S.192, E.283, T.287, R.290, N.457, V.462 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, R. et al., Determinants of the Inhibition of DprE1 and CYP2C9 by Antitubercular Thiophenes. Angew. Chem. Int. Ed. Engl. (2017)

Release Date

2017-09-13

Peptides

Cytochrome P450 2C9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 2C9

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