SMTL ID : 5w0m.1 (2 other biounits)

Structure of human TUT7 catalytic module (CM) in complex with U5 RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x U- U- U- U: U5 single-stranded RNA(Non-covalent)

U-U-U-U.1: 33 residues within 4Å: Chain A: F.69, G.70, S.71, N.74, A.84, I.123, T.125, A.126, K.127, V.128, I.130, D.143, S.145, N.148, A.151, N.154, T.155, D.186, A.187, S.188, S.193, Y.195, K.298, H.310, L.312, A.314, G.315, R.369, K.376, I.377, G.378, H.379 Ligands: SO4.2 Protein-ligand interaction information (PLIP) not available

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: S.71, G.77, F.78, S.81, K.176, K.180, S.194 Ligands: U-U-U-U.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.71, A:S.81, A:S.81, A:S.194 Water bridges: A:K.180 Salt bridges: A:K.176, A:K.180 SO4.3: 1 residues within 4Å: Chain A: R.118 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.118

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 6 residues within 4Å: Chain A: C.371, I.373, C.374, H.379, C.384, P.385 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.371, A:C.374, A:H.379, A:C.384

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.5: 7 residues within 4Å: Chain A: S.71, N.74, F.76, L.158, K.176, Y.195, T.198 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faehnle, C.R. et al., Multi-domain utilization by TUT4 and TUT7 in control of let-7 biogenesis. Nat. Struct. Mol. Biol. (2017)

Release Date

2017-06-28

Peptides

Terminal uridylyltransferase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Terminal uridylyltransferase 7

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