SMTL ID : 5w15.1

Crystal structure of an alpha/beta hydrolase fold protein from Burkholderia ambifaria.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: A.13, N.14, R.15 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.13, A:R.15, A:R.15 EDO.2: 2 residues within 4Å: Chain A: P.221, V.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.222 Water bridges: A:F.220

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: H.6, H.7, R.48, V.179 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.204, Q.205 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: N.17, F.18, E.19 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: R.204, Q.205 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: N.17, F.18, E.19 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain C: R.204, Q.205 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain C: S.181, R.184, A.185, L.188 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain D: R.204, Q.205 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 5 residues within 4Å: Chain B: Y.157 Chain D: S.138, F.140, Y.166, W.232 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:Y.157 MG.11: 2 residues within 4Å: Chain D: Q.239, R.252 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Irwin, R.M. et al., Crystal structure of an alpha/beta hydrolase fold protein from Burkholderia ambifaria. TO BE PUBLISHED

Release Date

2017-06-14

Peptides

Alpha/beta hydrolase fold protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

Alpha/beta hydrolase fold protein