SMTL ID : 5w1d.1

Crystal Structure of Mouse Protocadherin-15 EC4-7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.35 Å

Oligo State

monomer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.319, N.321, D.351, D.353, N.357, D.401 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.321, A:D.351, A:D.353, A:N.357, A:D.401 CA.2: 7 residues within 4Å: Chain A: E.235, R.286, E.287, D.317, V.318, D.320, D.353 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.235, A:E.287, A:D.317, A:D.320, A:D.353 CA.3: 4 residues within 4Å: Chain A: E.235, D.285, E.287, D.320 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.235, A:D.285, A:E.287, A:D.320 CA.4: 6 residues within 4Å: Chain A: Q.219, S.220, D.250, E.252, D.254, D.300 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:S.220, A:D.250, A:D.250, A:E.252, A:D.254 CA.5: 6 residues within 4Å: Chain A: N.111, N.113, D.143, D.145, N.149, D.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.113, A:D.143, A:D.143, A:N.149, A:D.195 CA.7: 4 residues within 4Å: Chain A: E.14, D.109, A.110, D.112 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.14, A:D.109

1 x K: POTASSIUM ION(Non-covalent)

K.6: 3 residues within 4Å: Chain A: D.112, D.145, E.146 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choudhary, D. et al., Structural determinants of protocadherin-15 mechanics and function in hearing and balance perception. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2018-06-06

Peptides

Protocadherin-15: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protocadherin-15