SMTL ID : 5w1k.1 (3 other biounits)

JUNV GP1 CR1-10 Fab CR1-28 Fab complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.99 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 8 residues within 4Å: Chain A: S.27, D.29 Chain E: Q.90, N.92, S.94, T.96, N.99, L.128 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain A Hydrophobic interactions: E:T.96 Hydrogen bonds: A:S.27, A:S.27

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain D: G.105 Chain E: D.37, W.48, N.80 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clark, L.E. et al., Vaccine-elicited receptor-binding site antibodies neutralize two New World hemorrhagic fever arenaviruses. Nat Commun (2018)

Release Date

2018-05-30

Peptides

CR1-28 Fab light chain: A
CR1-28 Fab heavy chain: B
CR1-10 Fab light chain: C
CR1-10 Fab heavy chain: D
Pre-glycoprotein polyprotein GP complex: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
N

D
O

E
P

CR1-28 Fab light chain

CR1-28 Fab heavy chain

CR1-10 Fab light chain

CR1-10 Fab heavy chain

Pre-glycoprotein polyprotein GP complex

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