SMTL ID : 5w23.1

Crystal Structure of RSV F in complex with 5C4 Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-3-3-3-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 5 residues within 4Å: Chain A: L.456, Y.457, Y.458 Chain C: W.52, M.370 No protein-ligand interaction detected (PLIP) ZN.2: 1 residues within 4Å: Chain B: N.496 No protein-ligand interaction detected (PLIP) ZN.3: 1 residues within 4Å: Chain C: N.175 No protein-ligand interaction detected (PLIP) ZN.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.5: 2 residues within 4Å: Chain F: P.64, S.142 No protein-ligand interaction detected (PLIP) ZN.6: 3 residues within 4Å: Chain H: D.75, D.78, H.80 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:D.78, H:H.80 ZN.7: 1 residues within 4Å: Chain H: R.73 No protein-ligand interaction detected (PLIP) ZN.8: 2 residues within 4Å: Chain I: E.50, E.120 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:E.50, I:E.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tian, D. et al., Structural basis of respiratory syncytial virus subtype-dependent neutralization by an antibody targeting the fusion glycoprotein. Nat Commun (2017)

Release Date

2017-12-06

Peptides

Fusion glycoprotein F0: ABC
5C4 Fab heavy chain: DFH
5C4 Fab light chain: EGI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
H

F
I

H
J

E
L

G
M

I
N

Fusion glycoprotein F0

5C4 Fab heavy chain

5C4 Fab light chain

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