SMTL ID : 5w2e.1 (1 other biounit)

HCV NS5B RNA-dependent RNA polymerase in complex with non-nucleoside inhibitor MK-8876

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x 9VY: 2-(4-fluorophenyl)-5-(11-fluoro-6H-pyrido[2',3':5,6][1,3]oxazino[3,4-a]indol-2-yl)-N-methyl-6-[methyl(methylsulfonyl)amino]-1-benzofuran-3-carboxamide(Non-covalent)

9VY.1: 26 residues within 4Å: Chain A: F.199, P.203, R.206, L.210, L.320, V.321, N.322, D.325, L.326, V.327, I.369, S.371, C.372, S.374, N.375, V.376, L.390, I.419, M.420, Y.421, I.453, Y.454, Y.458, L.472, W.556, F.557 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.199, A:L.210, A:V.327, A:L.390, A:L.390, A:I.419, A:I.453, A:Y.454, A:Y.458, A:L.472, A:W.556, A:W.556 Hydrogen bonds: A:R.206, A:R.206, A:N.322, A:S.371, A:S.371 pi-Stacking: A:Y.454, A:F.557 Halogen bonds: A:I.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McComas, C.C. et al., Development of a New Structural Class of Broadly Acting HCV Non-Nucleoside Inhibitors Leading to the Discovery of MK-8876. ChemMedChem (2017)

Release Date

2017-08-16

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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