SMTL ID : 5w2m.1

APOBEC3F Catalytic Domain Complex with a Single-Stranded DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

homo-octamer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.58, H.60 Chain C: H.39 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.58, A:H.60 ZN.2: 3 residues within 4Å: Chain B: H.58, H.60 Chain D: H.39 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.58, B:H.60 ZN.3: 3 residues within 4Å: Chain F: H.58, H.60 Chain H: H.39 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:H.58, F:H.60 ZN.4: 3 residues within 4Å: Chain G: H.58, H.60 Chain I: H.39 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:H.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fang, Y. et al., Molecular Interactions of a DNA Modifying Enzyme APOBEC3F Catalytic Domain with a Single-Stranded DNA. J. Mol. Biol. (2018)

Release Date

2017-12-13

Peptides

DNA dC->dU-editing enzyme APOBEC-3F: ABCDFGHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

F
J

G
K

H
L

I
M

DNA dC->dU-editing enzyme APOBEC-3F